Version 1.5 - Added cleaner script, modified setup script and added command line inputs

.idea/BM1D.iml

@@ -0,0 +1,2 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<module classpath="CMake" type="CPP_MODULE" version="4" />

.idea/misc.xml

@@ -0,0 +1,4 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="CMakeWorkspace" PROJECT_DIR="$PROJECT_DIR$" />
+</project>

.idea/modules.xml

@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="ProjectModuleManager">
+    <modules>
+      <module fileurl="file://$PROJECT_DIR$/.idea/BM1D.iml" filepath="$PROJECT_DIR$/.idea/BM1D.iml" />
+    </modules>
+  </component>
+</project>

.idea/vcs.xml

@@ -0,0 +1,6 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="VcsDirectoryMappings">
+    <mapping directory="$PROJECT_DIR$" vcs="Git" />
+  </component>
+</project>

BM1D.cc

@@ -7,6 +7,37 @@ using namespace std;
 
 int main(int argc, char* argv[])
 {
+    Int_t nSteps, nRuns, p0,p1,p2,p3;
+    Double_t mu1, mu2, sigma1, sigma2;
+    string fileName="input.root";
+    string random_type="u";
+    Int_t vis, typeOfRun;
+
+    nSteps=nRuns=p0=p1=p2=p3=vis=typeOfRun=0;
+    mu1=mu2=sigma1=sigma2=0.0;
+    if(argc==15)
+    {
+        nSteps=atoi(argv[1]);
+        nRuns=atoi(argv[2]);
+        p0=atoi(argv[3]);
+        p1=atoi(argv[4]);
+        p2=atoi(argv[5]);
+        p3=atoi(argv[6]);
+        mu1=atof(argv[7]);
+        mu2=atof(argv[8]);
+        sigma1=atof(argv[9]);
+        sigma2=atof(argv[10]);
+        fileName=argv[11];
+        random_type=argv[12];
+        vis=atoi(argv[1]); if((vis!=0)||(vis!=1)){vis=0;}
+        typeOfRun=atoi(argv[2]); if((typeOfRun!=0)||(typeOfRun!=1)||(typeOfRun!=2)){typeOfRun=0;}
+    }
+    else
+    {
+        //default runs with less parameters
+    }
+
+
   TApplication App("tapp", &argc, argv);
   Int_t n = 1000;
   BM1DProcess *myBM1DProcess = new BM1DProcess(n);

bm1d_build/CMakeCache.txt

@@ -1,453 +0,0 @@
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-# For build in directory: /home/hallgato9/hall9git/BM1D/bm1d_build
-# It was generated by CMake: /usr/bin/cmake
-# You can edit this file to change values found and used by cmake.
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-#elif defined(__sinix) || defined(__sinix__) || defined(__SINIX__)
-# define PLATFORM_ID "SINIX"
-
-#elif defined(__UNIX_SV__)
-# define PLATFORM_ID "UNIX_SV"
-
-#elif defined(__bsdos__)
-# define PLATFORM_ID "BSDOS"
-
-#elif defined(_MPRAS) || defined(MPRAS)
-# define PLATFORM_ID "MP-RAS"
-
-#elif defined(__osf) || defined(__osf__)
-# define PLATFORM_ID "OSF1"
-
-#elif defined(_SCO_SV) || defined(SCO_SV) || defined(sco_sv)
-# define PLATFORM_ID "SCO_SV"
-
-#elif defined(__ultrix) || defined(__ultrix__) || defined(_ULTRIX)
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-
-#elif defined(__XENIX__) || defined(_XENIX) || defined(XENIX)
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-
-#elif defined(__WATCOMC__)
-# if defined(__LINUX__)
-#  define PLATFORM_ID "Linux"
-
-# elif defined(__DOS__)
-#  define PLATFORM_ID "DOS"
-
-# elif defined(__OS2__)
-#  define PLATFORM_ID "OS2"
-
-# elif defined(__WINDOWS__)
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-
-# else /* unknown platform */
-#  define PLATFORM_ID ""
-# endif
-
-#else /* unknown platform */
-# define PLATFORM_ID ""
-
-#endif
-
-/* For windows compilers MSVC and Intel we can determine
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-# elif defined(_M_MIPS)
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-# elif defined(_M_SH)
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-# else /* unknown architecture */
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-#elif defined(__WATCOMC__)
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-# elif defined(_M_IX86)
-#  define ARCHITECTURE_ID "X86"
-
-# else /* unknown architecture */
-#  define ARCHITECTURE_ID ""
-# endif
-
-#else
-#  define ARCHITECTURE_ID ""
-#endif
-
-/* Convert integer to decimal digit literals.  */
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-  ('0' + (((n) / 10000000)%10)), \
-  ('0' + (((n) / 1000000)%10)),  \
-  ('0' + (((n) / 100000)%10)),   \
-  ('0' + (((n) / 10000)%10)),    \
-  ('0' + (((n) / 1000)%10)),     \
-  ('0' + (((n) / 100)%10)),      \
-  ('0' + (((n) / 10)%10)),       \
-  ('0' +  ((n) % 10))
-
-/* Convert integer to hex digit literals.  */
-#define HEX(n)             \
-  ('0' + ((n)>>28 & 0xF)), \
-  ('0' + ((n)>>24 & 0xF)), \
-  ('0' + ((n)>>20 & 0xF)), \
-  ('0' + ((n)>>16 & 0xF)), \
-  ('0' + ((n)>>12 & 0xF)), \
-  ('0' + ((n)>>8  & 0xF)), \
-  ('0' + ((n)>>4  & 0xF)), \
-  ('0' + ((n)     & 0xF))
-
-/* Construct a string literal encoding the version number components. */
-#ifdef COMPILER_VERSION_MAJOR
-char const info_version[] = {
-  'I', 'N', 'F', 'O', ':',
-  'c','o','m','p','i','l','e','r','_','v','e','r','s','i','o','n','[',
-  COMPILER_VERSION_MAJOR,
-# ifdef COMPILER_VERSION_MINOR
-  '.', COMPILER_VERSION_MINOR,
-#  ifdef COMPILER_VERSION_PATCH
-   '.', COMPILER_VERSION_PATCH,
-#   ifdef COMPILER_VERSION_TWEAK
-    '.', COMPILER_VERSION_TWEAK,
-#   endif
-#  endif
-# endif
-  ']','\0'};
-#endif
-
-/* Construct a string literal encoding the version number components. */
-#ifdef SIMULATE_VERSION_MAJOR
-char const info_simulate_version[] = {
-  'I', 'N', 'F', 'O', ':',
-  's','i','m','u','l','a','t','e','_','v','e','r','s','i','o','n','[',
-  SIMULATE_VERSION_MAJOR,
-# ifdef SIMULATE_VERSION_MINOR
-  '.', SIMULATE_VERSION_MINOR,
-#  ifdef SIMULATE_VERSION_PATCH
-   '.', SIMULATE_VERSION_PATCH,
-#   ifdef SIMULATE_VERSION_TWEAK
-    '.', SIMULATE_VERSION_TWEAK,
-#   endif
-#  endif
-# endif
-  ']','\0'};
-#endif
-
-/* Construct the string literal in pieces to prevent the source from
-   getting matched.  Store it in a pointer rather than an array
-   because some compilers will just produce instructions to fill the
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-char const* info_arch = "INFO" ":" "arch[" ARCHITECTURE_ID "]";
-
-
-
-
-const char* info_language_dialect_default = "INFO" ":" "dialect_default["
-#if !defined(__STDC_VERSION__)
-  "90"
-#elif __STDC_VERSION__ >= 201000L
-  "11"
-#elif __STDC_VERSION__ >= 199901L
-  "99"
-#else
-#endif
-"]";
-
-/*--------------------------------------------------------------------------*/
-
-#ifdef ID_VOID_MAIN
-void main() {}
-#else
-int main(int argc, char* argv[])
-{
-  int require = 0;
-  require += info_compiler[argc];
-  require += info_platform[argc];
-  require += info_arch[argc];
-#ifdef COMPILER_VERSION_MAJOR
-  require += info_version[argc];
-#endif
-#ifdef SIMULATE_ID
-  require += info_simulate[argc];
-#endif
-#ifdef SIMULATE_VERSION_MAJOR
-  require += info_simulate_version[argc];
-#endif
-#if defined(__CRAYXE) || defined(__CRAYXC)
-  require += info_cray[argc];
-#endif
-  require += info_language_dialect_default[argc];
-  (void)argv;
-  return require;
-}
-#endif

bm1d_build/CMakeFiles/3.5.1/CompilerIdCXX/CMakeCXXCompilerId.cpp

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-
-
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-
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-# define COMPILER_ID "Intel"
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-  /* __INTEL_COMPILER = VRP */
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-# if defined(__INTEL_COMPILER_UPDATE)
-#  define COMPILER_VERSION_PATCH DEC(__INTEL_COMPILER_UPDATE)
-# else
-#  define COMPILER_VERSION_PATCH DEC(__INTEL_COMPILER   % 10)
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-  /* __INTEL_COMPILER_BUILD_DATE = YYYYMMDD */
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-# endif
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-   /* _MSC_VER = VVRR */
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-#  define SIMULATE_VERSION_MINOR DEC(_MSC_VER % 100)
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-
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-# define COMPILER_VERSION_MINOR HEX(__CODEGEARC_VERSION__>>16 & 0x00FF)
-# define COMPILER_VERSION_PATCH DEC(__CODEGEARC_VERSION__     & 0xFFFF)
-
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-# define COMPILER_VERSION_MINOR HEX(__BORLANDC__ & 0xFF)
-
-#elif defined(__WATCOMC__) && __WATCOMC__ < 1200
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-#  define COMPILER_VERSION_PATCH DEC(__WATCOMC__ % 10)
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-
-#elif defined(__WATCOMC__)
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-
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-   /* __SUNPRO_CC = 0xVRRP */
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-   /* __SUNPRO_CC = 0xVRP */
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-# define COMPILER_VERSION_PATCH DEC(__HP_aCC     % 100)
-
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-# define COMPILER_VERSION_MINOR DEC(__DECCXX_VER/100000  % 100)
-# define COMPILER_VERSION_PATCH DEC(__DECCXX_VER         % 10000)
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bm1d_build/cmake_install.cmake

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-string(REGEX REPLACE "/$" "" CMAKE_INSTALL_PREFIX "${CMAKE_INSTALL_PREFIX}")
-
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-  if(BUILD_TYPE)
-    string(REGEX REPLACE "^[^A-Za-z0-9_]+" ""
-           CMAKE_INSTALL_CONFIG_NAME "${BUILD_TYPE}")
-  else()
-    set(CMAKE_INSTALL_CONFIG_NAME "")
-  endif()
-  message(STATUS "Install configuration: \"${CMAKE_INSTALL_CONFIG_NAME}\"")
-endif()
-
-# Set the component getting installed.
-if(NOT CMAKE_INSTALL_COMPONENT)
-  if(COMPONENT)
-    message(STATUS "Install component: \"${COMPONENT}\"")
-    set(CMAKE_INSTALL_COMPONENT "${COMPONENT}")
-  else()
-    set(CMAKE_INSTALL_COMPONENT)
-  endif()
-endif()
-
-# Install shared libraries without execute permission?
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-  set(CMAKE_INSTALL_SO_NO_EXE "1")
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-
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-  if(EXISTS "$ENV{DESTDIR}${CMAKE_INSTALL_PREFIX}/bin/BM1D" AND
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-    file(RPATH_CHECK
-         FILE "$ENV{DESTDIR}${CMAKE_INSTALL_PREFIX}/bin/BM1D"
-         RPATH "")
-  endif()
-  file(INSTALL DESTINATION "${CMAKE_INSTALL_PREFIX}/bin" TYPE EXECUTABLE FILES "/home/hallgato9/hall9git/BM1D/bm1d_build/BM1D")
-  if(EXISTS "$ENV{DESTDIR}${CMAKE_INSTALL_PREFIX}/bin/BM1D" AND
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-      execute_process(COMMAND "/usr/bin/strip" "$ENV{DESTDIR}${CMAKE_INSTALL_PREFIX}/bin/BM1D")
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-  set(CMAKE_INSTALL_MANIFEST "install_manifest_${CMAKE_INSTALL_COMPONENT}.txt")
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-string(REPLACE ";" "\n" CMAKE_INSTALL_MANIFEST_CONTENT
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clean.sh

@@ -1,2 +1,2 @@
 rm *.root
-rm -rf bm1d_build
+rm -rf ../bm1d_build

setup.sh

@@ -1,8 +1,8 @@
 #!/bin/bash
 
-rm -rf bm1d_build
-mkdir bm1d_build
-cd bm1d_build
-cmake ../
+rm -rf ../bm1d_build
+mkdir ../bm1d_build
+cd ../bm1d_build
+cmake ../BM1D
 make
 echo Setup complete.