Run script Alpha
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#!/bin/bash
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EXECUTABLE=../bm1d_build/BM1D
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type=$1
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NumberOfSteps=0
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NumberOfRuns=0
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P0=0
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P1=0
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x1=0
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x2=0
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Mu1=0
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Mu2=0
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Sigma1=0
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Sigma2=0
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Visible=0
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Typeofrun=0
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Filename="result.root"
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if [ $# -lt 1 ]; then
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	echo "u for uniform"
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	echo "g for gauss"
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	echo "l for layer"
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	read -p 'Type: ' type #type get it's value here, or from command line
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fi
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case $type in
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    u)
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    if [ $# -ne 8 ]; then #if too few arguments given
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        echo "USAGE (Uniform): $0 $1 NumberofSteps NumberofRuns P0 P1 Visible"
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		echo "Follow the next steps (Don't leave blank):"
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        read -p 'Number of Steps= ' NumberOfSteps
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        read -p 'Number of Runs= ' NumberOfRuns
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        read -p 'P0= ' P0
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        read -p 'P1= ' P1
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		read -p 'Visible= ' Visible
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		read -p 'ROOT file name+extension(root)= ' Filename
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    else if [ $# -eq 8 ]; then #set the needed variables
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        NumberOfSteps=$2
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        NumberOfRuns=$3
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        P0=$4
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        P1=$5
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        Visible=$6
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		Filename=$7
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	fi
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	fi
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	$EXECUTABLE $NumberOfSteps $NumberOfRuns $P0 $P1 $x1 $x2 $Mu1 $Mu2 $Sigma1 $Sigma2 $Filename $type $Visible $Typeofrun
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    ;;
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    g)
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    if [ $# -ne 8 ]; then #if too few arguments given
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        echo "USAGE (Gauss): $0 $1 NumberofSteps NumberofRuns Mu1 Sigma1 Visible Filename"
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		echo "Follow the next steps (Don't leave blank):"
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        read -p 'Number of Steps= ' NumberOfSteps
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        read -p 'Number of Runs= ' NumberOfRuns
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        read -p 'Mu1= ' Mu1
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        read -p 'Sigma1= ' Sigma1
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        read -p 'Visible= ' Visible
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		read -p 'ROOT file name+extension(root)= ' Filename
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    else if [ $# -eq 8 ]; then #set the needed variables
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		NumberOfSteps=$2
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        NumberOfRuns=$3
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		Mu1=$4
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		Sigma1=$5
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		Visible=$6
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		Filename=$7
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    fi
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	fi
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	$EXECUTABLE $NumberOfSteps $NumberOfRuns $P0 $P1 $x1 $x2 $Mu1 $Mu2 $Sigma1 $Sigma2 $Filename $type $Visible $Typeofrun
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    ;;
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    l)
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    if [ $# -ne 13 ]; then
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        echo "USAGE(Layer): $0 $1 NumberofSteps NumberofRuns P0 x1 x2 Mu1 Mu2 Sigma1 Sigma2 Visible Filename"
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		echo "Follow the next steps (Don't leave blank):"
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        read -p 'Number of Steps= ' NumberOfSteps
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        read -p 'Number of Runs= ' NumberOfRuns
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        read -p 'P0= ' P0
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        read -p 'x1= ' x1
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		read -p 'x2= ' x2
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		read -p 'Mu1= ' Mu1
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		read -p 'Sigma1= ' Sigma1
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		read -p 'Mu2= ' Mu2
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		read -p 'Sigma2= ' Sigma2
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        read -p 'Visible= ' Visible
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		read -p 'ROOT file name+extension(root)= ' Filename
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    else if [ $# -eq 13 ]; then
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         NumberOfSteps=$2
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		 NumberofRuns=$3
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		 P0=$4
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		 x1=$5
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		 x2=$6
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		 Mu1=$7
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		 Mu2=$8
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		 Sigma1=$9
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		 Sigma2=$10
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		 Visible=$11
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		 Filename=$12
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    fi
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	fi
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	$EXECUTABLE $NumberOfSteps $NumberOfRuns $P0 $P1 $x1 $x2 $Mu1 $Mu2 $Sigma1 $Sigma2 $Filename $type $Visible $Typeofrun
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    ;;
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	help)
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		echo "USAGE:"
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		echo "Simply call $0 and follow the next steps,"
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		echo "or you can give the arguments directly from command line:"
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		echo "Uniform: $0 u NumberofSteps NumberofRuns P0 P1"
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		echo "Gaus: $0 g NumberofSteps NumberofRuns Mu1 Sigma1"
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		echo "Layer: $0 $1 NumberofSteps NumberofRuns P0 x1 x2 Mu1 Mu2 Sigma1 Sigma2 Visible Filename"
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	;;
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    *)
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		echo "USAGE:"
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		echo "Simply call $0 and follow the next steps,"
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		echo "or you can give the arguments directly from command line:"
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		echo "Uniform: $0 u NumberofSteps NumberofRuns P0 P1"
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		echo "Gaus: $0 g NumberofSteps NumberofRuns Mu1 Sigma1"
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		echo "Layer: $0 $1 NumberofSteps NumberofRuns P0 x1 x2 Mu1 Mu2 Sigma1 Sigma2 Visible Filename"
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esac
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