From fc790d0de7dd47d52b997278e4ea90990ee596cd Mon Sep 17 00:00:00 2001
From: dbalazs92 <balazsdemeter92@gmail.com>
Date: Mon, 30 Oct 2017 09:41:11 +0100
Subject: [PATCH] Version 1.4 - New structure

---
 BM1D.cc                 |  83 +++++-------------------------------
 README.md               |   2 +
 include/BM1DProcess.hh  |  35 +++++++++++++++
 include/BM1DProcess.hh~ |   0
 include/Plotter.hh      |  32 ++++++++++++++
 include/Plotter.hh~     |   0
 include/Progress.hh     |  58 -------------------------
 result.root             | Bin 0 -> 13269 bytes
 setup.sh                |   6 +--
 src/BM1DProcess.cc      |  40 +++++++++++++++++
 src/BM1DProcess.cc~     |   1 +
 src/Plotter.cc          |  35 +++++++++++++++
 src/Plotter.cc~         |   0
 src/Progress.cc         |  92 ----------------------------------------
 14 files changed, 157 insertions(+), 227 deletions(-)
 create mode 100644 include/BM1DProcess.hh
 create mode 100644 include/BM1DProcess.hh~
 create mode 100644 include/Plotter.hh
 create mode 100644 include/Plotter.hh~
 delete mode 100644 include/Progress.hh
 create mode 100644 result.root
 mode change 100755 => 100644 setup.sh
 create mode 100644 src/BM1DProcess.cc
 create mode 100644 src/BM1DProcess.cc~
 create mode 100644 src/Plotter.cc
 create mode 100644 src/Plotter.cc~
 delete mode 100644 src/Progress.cc

diff --git a/BM1D.cc b/BM1D.cc
index 2eae252..4f98d29 100644
--- a/BM1D.cc
+++ b/BM1D.cc
@@ -1,81 +1,20 @@
-/// BM1D program. Date: 2017-10-29 Creators: Balázs Demeter, Balázs Ujvári, Dávid Baranyai
-
 #include <iostream>
-#include "Progress.hh"
+#include "BM1DProcess.hh"
+#include "Plotter.hh"
 #include "TApplication.h"
-#include "TGraph.h"
 
 using namespace std;
 
-void OpenRootFile()
-{
-		TFile *fIn = TFile::Open("Plot1.root", "READ");
-		fIn->ls();
-		TGraph *Ga;
-		TGraph *Gb;
-		fIn->GetObject("1", Ga);
-		fIn->GetObject("2", Gb);
-		Ga->Draw();
-		Gb->Draw("same");
-		delete fIn;
-}
-
-
 int main(int argc, char* argv[])
 {
-	Int_t n = 1000, p0 = 1, start = 0;
-	
-	TApplication App("tapp", &argc, argv);
-	TCanvas* Canv = new TCanvas("c10","Live display",800,400);
-	
-	if(argc==2)
-	{
-		OpenRootFile();
-	}
-	else
-	{
-		
-		Progress* Pr1 = new Progress(n,p0,start);
-		Progress* Pr2 = new Progress(n,p0,start);
-		
-		Pr1->Count('u');
-		Pr2->Count('g');
-		
-		vector<Double_t> x1 = Pr1->GetX();
-		vector<Double_t> y1 = Pr1->GetY();
-		vector<Double_t> x2 = Pr2->GetX();
-		vector<Double_t> y2 = Pr2->GetY();
-		
-		TGraph* G1 = new TGraph(n,&x1[0],&y1[0]);
-		TGraph* G2 = new TGraph(n,&x2[0],&y2[0]);
-		
-		TFile* fOut = new TFile("Plot1.root", "RECREATE");
-		
-		G1->SetLineColor(1);
-		G1->SetLineWidth(1);
-		G1->SetMarkerColor(1);
-		G1->SetMarkerStyle(0);
-		G1->SetTitle("Brownian Movement D=1");
-		G1->GetXaxis()->SetTitle("X");
-		G1->GetYaxis()->SetTitle("Time");
-		G2->SetLineColor(2);
-		G2->SetLineWidth(1);
-		G2->SetMarkerColor(2);
-		G2->SetMarkerStyle(0);
-		G2->SetTitle("Brownian Movement D=1");
-		G2->GetXaxis()->SetTitle("X");
-		G2->GetYaxis()->SetTitle("Time");
-		
-		G1->Draw();
-		G2->Draw("same");
-		G1->Write("1");
-		G2->Write("2");
-		
-		fOut->Close();
-		
-	}
-	
-	App.Run();
-	return 0;
+  TApplication App("tapp", &argc, argv);
+  Int_t n = 1000;
+  BM1DProcess *myBM1DProcess = new BM1DProcess(n);
+  myBM1DProcess->Init();
+  myBM1DProcess->Run();
+  Plotter* myPlotter = new Plotter();
+  myPlotter->Plot(n, myBM1DProcess->GetT(), myBM1DProcess->GetX());
 
+  App.Run();
+  return 0;
 }
diff --git a/README.md b/README.md
index 9296e62..d91fdaa 100644
--- a/README.md
+++ b/README.md
@@ -51,6 +51,8 @@ If there's command line argument, then program opens the created root file. Name
 
 ## Updates
 
+* 2017/10/30 - 'v1.4' - New Structure
+
 * 2017/10/29 - 'v1.3.1' - Release Candidate
 
 * 2017/10/29 - 'v1.3' - Minor fixes in Progress
diff --git a/include/BM1DProcess.hh b/include/BM1DProcess.hh
new file mode 100644
index 0000000..ba91c09
--- /dev/null
+++ b/include/BM1DProcess.hh
@@ -0,0 +1,35 @@
+#ifndef BM1DProcess_h
+#define BM1DProcess_h 1
+
+#include <iostream>
+#include <string>
+#include <fstream>
+#include <cmath>
+
+#include "TRandom.h"
+
+class BM1DProcess {
+public:
+  BM1DProcess(Int_t n); //n is the number of steps
+  ~BM1DProcess();
+  
+  void SetP0(Double_t p0_new){p0 = p0_new;}
+  void SetP1(Double_t p1_new){p1 = p1_new;}
+
+  void Init();
+  void Run();
+  
+  std::vector<Double_t> GetT(){return t;}
+  std::vector<Double_t> GetX(){return x;}
+
+ private:
+  Int_t nSteps;
+  Double_t p0,p1,p2,p3,p4;
+  TRandom* randomGenerator;
+  Double_t rand1;
+  std::vector<Double_t> t;
+  std::vector<Double_t> x;
+};
+  
+#endif  
+ 
diff --git a/include/BM1DProcess.hh~ b/include/BM1DProcess.hh~
new file mode 100644
index 0000000..e69de29
diff --git a/include/Plotter.hh b/include/Plotter.hh
new file mode 100644
index 0000000..d21ed09
--- /dev/null
+++ b/include/Plotter.hh
@@ -0,0 +1,32 @@
+#ifndef Plotter_h
+#define Plotter_h 1
+
+#include <iostream>
+#include <string>
+#include <fstream>
+#include <cmath>
+
+#include "TROOT.h"
+#include "TF1.h"
+#include "TH1.h"
+#include "TH2.h"
+#include "TH3.h"
+#include "TNtuple.h"
+#include "TFile.h"
+#include "TMath.h"
+#include "TCanvas.h"
+#include "TGraph.h"
+#include "TTree.h"
+
+class Plotter {
+public:
+  Plotter();
+  void Plot(Int_t n, std::vector<Double_t> t, std::vector<Double_t> x);
+private:
+  TGraph* g1;
+  TFile* fOut;
+  TCanvas* canv;
+  TTree *BM1DTree;
+  Double_t tl,xl;
+};
+#endif
diff --git a/include/Plotter.hh~ b/include/Plotter.hh~
new file mode 100644
index 0000000..e69de29
diff --git a/include/Progress.hh b/include/Progress.hh
deleted file mode 100644
index 2762ef5..0000000
--- a/include/Progress.hh
+++ /dev/null
@@ -1,58 +0,0 @@
-/// BM1D program. Date: 2017-10-29 Creators: Balázs Demeter, Balázs Ujvári, Dávid Baranyai
-
-#ifndef Progress_h
-#define Progress_h 1
-
-#include <iostream>
-#include <string>
-#include <fstream>
-#include <cmath>
-
-#include "TROOT.h"
-#include "TF1.h"
-#include "TH1.h"
-#include "TH2.h"
-#include "TH3.h"
-#include "TNtuple.h"
-#include "TFile.h"
-#include "TRandom.h"
-#include "TMath.h"
-#include "TCanvas.h"
-
-class Progress {
-
-public:
-
- Progress(Int_t n);
- Progress(Int_t n, Double_t p0_Set);
- Progress(Int_t n, Double_t p0_Set, Double_t startposition);
- ~Progress();
- 
- void Count(char a);
- 
- Double_t GetP0();
- Int_t GetSteps();
- Double_t GetNext(char a);
- Double_t GetPrevious();
- 
- void SetP0(double p0_new);
- 
- std::vector<Double_t> GetX();
- std::vector<Double_t> GetY();
-
-private:
- 
- TRandom* random1;
- const Int_t n;
- std::vector<Double_t> x;
- std::vector<Double_t> y;
- 
- Double_t p0;
- Double_t preVstate;
- Int_t steps;
- 
-};
-
-#endif
-
-
diff --git a/result.root b/result.root
new file mode 100644
index 0000000000000000000000000000000000000000..25bbb833ee0f3228984d7c7eaa28616467ca0ca2
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HcmV?d00001

diff --git a/setup.sh b/setup.sh
old mode 100755
new mode 100644
index ee2b421..7587dd5
--- a/setup.sh
+++ b/setup.sh
@@ -1,10 +1,6 @@
 #!/bin/bash
-#
-# Author: Balázs Demeter (balazsdemeter92@gmail.com)
-# Version: 1.0
-#
-# Script for build and make Brownian movement in one dimension
 
+rm -rf bm1d_build
 mkdir bm1d_build
 cd bm1d_build
 cmake ../
diff --git a/src/BM1DProcess.cc b/src/BM1DProcess.cc
new file mode 100644
index 0000000..364a117
--- /dev/null
+++ b/src/BM1DProcess.cc
@@ -0,0 +1,40 @@
+#include "BM1DProcess.hh"
+
+BM1DProcess::BM1DProcess(Int_t nP) : 
+  nSteps (nP), p0(0.5), p1(0.3)
+{
+  randomGenerator = new TRandom();
+}
+
+BM1DProcess::~BM1DProcess()
+{
+  ;
+}
+
+void BM1DProcess::Init(){
+  t.push_back(0.0);  //let's start at t=0, x=0, you can change it if you vant, please use Set methods
+  x.push_back(0.0);
+}
+
+void BM1DProcess::Run(){
+  for (Int_t i = 1;i < nSteps;i++)
+    {
+      rand1 = randomGenerator->Uniform();
+	if(rand1 < p0) {  //step in time, but no step in x
+	  t.push_back(t[i-1] + 1);
+	  x.push_back(x[i-1]);
+	}
+	else {//step left or right
+	  if(rand1 < p0 + p1)
+	    {
+	      t.push_back(t[i-1]+1);
+	      x.push_back(x[i-1]+1); //one step right
+	    }
+	  else
+	    {
+	      t.push_back(t[i-1]+1);
+	      x.push_back(x[i-1]-1); //one step left
+	    }
+	}
+    }
+}
diff --git a/src/BM1DProcess.cc~ b/src/BM1DProcess.cc~
new file mode 100644
index 0000000..792d600
--- /dev/null
+++ b/src/BM1DProcess.cc~
@@ -0,0 +1 @@
+#
diff --git a/src/Plotter.cc b/src/Plotter.cc
new file mode 100644
index 0000000..b947b4e
--- /dev/null
+++ b/src/Plotter.cc
@@ -0,0 +1,35 @@
+#include "Plotter.hh"
+
+Plotter::Plotter()
+{
+  ;
+}
+void Plotter::Plot(Int_t n, std::vector<Double_t> t, std::vector<Double_t> x){
+  fOut = new TFile("result.root", "RECREATE");
+  g1 = new TGraph(n,&t[0],&x[0]);
+  canv = new TCanvas("canc","display",800,400);
+  TTree *BM1DTree = new TTree("BM1DTree","BM1DTree");
+  
+  g1->Draw();
+  g1->SetLineColor(1);
+  g1->SetLineWidth(1);
+  g1->SetMarkerColor(1);
+  g1->SetMarkerStyle(0);
+  g1->SetTitle("Brownian Movement D=1");
+  g1->GetYaxis()->SetTitle("X");
+  g1->GetXaxis()->SetTitle("Time");
+  
+  BM1DTree->Branch("tl",&tl, "tl/D");
+  BM1DTree->Branch("xl",&xl, "xl/D");
+  for (unsigned int i = 0; i < t.size(); i++){
+    tl = t[i];
+    xl = x[i];
+    BM1DTree->Fill();
+  }
+  
+  g1->Write();
+  BM1DTree->Write();
+  fOut->Close();
+  
+}
+
diff --git a/src/Plotter.cc~ b/src/Plotter.cc~
new file mode 100644
index 0000000..e69de29
diff --git a/src/Progress.cc b/src/Progress.cc
deleted file mode 100644
index 9f6fa55..0000000
--- a/src/Progress.cc
+++ /dev/null
@@ -1,92 +0,0 @@
-/// BM1D program. Date: 2017-10-29 Creators: Balázs Demeter, Balázs Ujvári, Dávid Baranyai
-
-#include "Progress.hh"
-
-Progress::Progress(Int_t nP) : 
-n (nP), p0(1), preVstate(0), steps(0)
-{
-	random1 = new TRandom();
-}
-
-Progress::Progress(Int_t nP, Double_t p0_Set) : 
-n (nP), p0(p0_Set), preVstate(0), steps(0)
-{
-	random1 = new TRandom();
-}
-
-Progress::Progress(Int_t nP, Double_t p0_Set, Double_t startposition) : 
-n (nP), p0(p0_Set), preVstate(startposition), steps(0)
-{
-	random1 = new TRandom();
-}
-
-Progress::~Progress()
-{
-
-}
-
-void Progress::Count(char a)
-{
-	for (Int_t i=0;i<n;i++)
-    {
-        if(i==0)
-        {
-            x.push_back(p0);
-            y.push_back(0.0);
-        }
-        
-        x.push_back(GetNext(a));
-		y.push_back(steps);
-    }
-}
-
-Double_t Progress::GetNext(char a)
-{
-		switch(a){
-			case 'u':
-			preVstate+=random1->Uniform(-p0,p0);
-			break;
-			
-			case 'g':
-			preVstate+=random1->Gaus(-p0,p0);
-			break;
-			
-			default:
-			std::cout<<"Invalid argument!"<<std::endl;
-			preVstate+=0.0;
-			break;
-		}
-        
-        steps++;
-        return preVstate;
-}
-    
-Double_t Progress::GetPrevious()
-{
-        return preVstate;
-}
-    
-void Progress::SetP0(Double_t p0_new)
-{
-        p0=p0_new;
-}
-    
-Double_t Progress::GetP0()
-{
-        return p0;
-}
-    
-Int_t Progress::GetSteps()
-{
-        return steps;
-}
-    
-std::vector<Double_t> Progress::GetX()
-{
-	return x;
-}
-
-std::vector<Double_t> Progress::GetY()
-{
-	return y;
-}